We will be using the statistical software package R for this course. The link below will take you to the website for downloading the R software package for Windows, Macs, and Linux platforms:

A tutorial on R can be found below by clicking the link below:

Instruction on how to download the R "genetics" package are below. You must have an internet connection in order to install the package.

Commands for the R demonstration on Hardy-Weinberg Equilibrium are below.

The link below will take you to the website for downloading the Haploview software package for Windows, Macs, and Linux platforms:

R demonstration commands for plotting the log-liklihood
function for the Sweet Pea Linkage Analysis example are below.

Below are commands for plotting a function f(x) vs. x in R

Below are R Commands for the EM Algorithm demonstration for the ABO blood type example:

Commands for the R demonstration on Association Testing and Odds Ratios:

Commands in R for Cyrptic Population Structure and Association Testing

516 Home Page |
Lecture Notes |
Homework Assignments |
---|