Biostat 516/Epi 516/PHG 519

Autumn 2011

We will be using the statistical software package R for this course. The link below will take you to the website for downloading the R software package for Windows, Macs, and Linux platforms:



A tutorial on R can be found below by clicking the link below:



Instruction on how to download the R "genetics" package are below. You must have an internet connection in order to install the package.



Commands for the R demonstration on Hardy-Weinberg Equilibrium are below.



The link below will take you to the website for downloading the Haploview software package for Windows, Macs, and Linux platforms:



R demonstration commands for plotting the log-liklihood function for the Sweet Pea Linkage Analysis example are below.



Below are commands for plotting a function f(x) vs. x in R



Below are R Commands for the EM Algorithm demonstration for the ABO blood type example:





Commands for the R demonstration on Association Testing and Odds Ratios:





Commands in R for Cyrptic Population Structure and Association Testing

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