We will be using the statistical software package R for this course. The link below will take you to the website for downloading the R software package for Windows, Macs, and Linux platforms:
A tutorial on R can be found below by clicking the link below:
Instruction on how to download the R "genetics" package are below. You must have an internet connection in order to install the package.
Commands for the R demonstration on Hardy-Weinberg Equilibrium are below.
The link below will take you to the website for downloading the Haploview software package for Windows, Macs, and Linux platforms:
R demonstration commands for plotting the log-liklihood function for the Sweet Pea Linkage Analysis example are below.
Below are commands for plotting a function f(x) vs. x in R
Below are R Commands for the EM Algorithm demonstration for the ABO blood type example:
Commands for the R demonstration on Association Testing and Odds Ratios:
Commands in R for Cyrptic Population Structure and Association Testing
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