ANOVA IN ARRAY DATA
MODELING
largely done to estimate/mitigate pesky nuisance
effects
replication essential
a typical model (two-color, Katie Kerr, Wing
Wong):
Yijkgr = m + Ai + Dj + (AD) ij + Gg + (AG) igr +
(DG)jg + (CG)kg + sijkgr
AD = dye-array; AG = array-gene; DG = dye-gene;
CG = condition-gene (the interaction of interest)