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Gygi et al studied mRNA-protein level correlations in 106
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yeast proteins and found correlation = 0.935, but 0.36
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when highly expressed proteins removed; others have
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found somewhat better correlations.
Dynamic range = 100
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molecules for rare species to a few million for glycolytic
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enzymes (yeast). MS detects
one billion molecules in best
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cases.
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post-translational modifications, differential half-life,
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differential translation rates,…
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there can be up to 10X variation in mRNA:protein ratios;
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average in yeast = 1:4000 for abundant proteins
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