Why proteomics  ¹
transcriptomics
Gygi et al studied mRNA-protein level correlations in 106
yeast proteins and found correlation = 0.935, but 0.36
when highly expressed proteins removed; others have
found somewhat better correlations.  Dynamic range = 100
molecules for rare species to a few million for glycolytic
enzymes (yeast).  MS detects one billion molecules in best
cases.
post-translational modifications, differential half-life,
differential translation rates,…
there can be up to 10X variation in mRNA:protein ratios;
average in yeast = 1:4000 for abundant proteins