Linkage disequilibrium
necessary for association studies
highly variable throughout the genome as a function
of distance
Kruglyak: use d2 as a marker = squared difference of
marker frequency on normal and variant
chromosomes
sample size µ1/ d2, so we want d2 > 0.3, say.
simulation suggests 3kb distance, on the average,
corresponds to d2 = 0.4 (1 Mb = 1 cM)
this is too conservative in some parts of the genome.