Oct. 2. Toshihide Kitakado. Population Structure.
Organizational meeting to pick
topics and speakers.
Oct. 9: Sarah Ng and Charles Cheung. SNP Typing.
Syvannen. Accessing genetic variation: genotyping single nucleotide polymorphisms. Nature Reviews Genetics 2:930, 2001
http://www.nature.com/nrg/journal/v2/n12/pdf/nrg1201-930a.pdf
Pask et al. Investigating the utility of combining phi29 whole genome amplification and highly multiplexed single nucleotide polymprohism BeadArray genotyping. BMC Biotechnology 4:15, 2004
http://www.biomedcentral.com/content/pdf/1472-6750-4-15.pdf
Kenendy et al. Large-scale genotyping of complex DNA. Nature Biotechnology 21:1233, 2003
http://www.nature.com/nbt/journal/v21/n10/pdf/nbt869.pdf
Oct. 16: Kayleen Williams and Yanming Di. Association Mapping.
D.J. Schaid. 2004. Evaluating associations of haplotypes with traits.
http://www3.interscience.wiley.com/cgi-bin/fulltext/109792459/PDFSTART
Oct. 23: David Clayton Seminar
Oct. 30: Yoonha Choi. Effect of relatedness on case-control tests (talk).
Nov. 6: Xiuwen Zheng and Fred Boehm. Imputation.
J.Y. Dai et al. 2007. Imputation methods to improve inference in SNP association studies. Genetic Epidemiology 30:690
http://www3.interscience.wiley.com/cgi-bin/fulltext/113310196/PDFSTART
D.L. Nicolae. 2007. Testing untyped alleles (TUNA) - Applications to genome-wde association studies. Genetic Epidemiology 30:718
http://www3.interscience.wiley.com/cgi-bin/fulltext/113310193/PDFSTART
Nov. 13: Joan Zhao and BSW. Multilocus Identity by Descent
J. Hernandez-Snachez et al. On the prediction of simultaneous inbreeding coefficients at multiple loci. Genetical Research 83:113-120, 2004.
http://www.journals.cambridge.org/action/displayAbstract?fromPage=online&aid=217799
W.G. Hill and J. Hernandez-Sanchez. Prediction of multilocus indentity-by-descent. Genetics 176:2307-2315, 2007
http://www.genetics.org/cgi/reprint/176/4/2307
Nov. 20: Indika Rajapakse and Quenna Wong. Multilocus Linkage Disequilibrium.
Gorelick R, Laubichler MD. Decomposing multilocus linkage disequilibrium. Genetics. 2004 Mar;166(3):1581-3.
http://www.genetics.org.offcampus.lib.washington.edu/cgi/content/full/166/3/1581
BJ Hayes, PM Visscher, HC McPartlan and ME Goddard. Novel multilocus measure of linkage disequilibrium to estimate past effective population size. Genome Res. 2003 Apr;13(4):635-43. Epub 2003 Mar 12.
http://www.genome.org.offcampus.lib.washington.edu/cgi/content/full/13/4/635
Nov. 27:
Patrick Danaher and Matthew Bryan. Gene Expression. Storey vs. Cheung
JM Akey, S Biswas, JT Leek, JD Storey. 2007. On the design and analysis of gene expression studies in human populations. Nature Genetics 39:807-808.
http://www.nature.com/ng/journal/v39/n7/full/ng0707-807.html
R Spielman and V Cheung. 2007. Reply. Nature Genetics 39:808-809.
http://www.nature.com/ng/journal/v39/n7/full/ng0707-808.html
Dec. 4: Elizabeth Rosenthal. Detecting association in the presence of long range LD and many SNPs (Talk)