Estimating and validating relationships
========================================

  Hooker et al. (1929)
  The chances of establishing non-paternity by determination of blood groups. 
  The Journal of Immunology, 16: 451--462

 Thompson, E.A. (1975).
 The estimation of pairwise relationship.
 Ann. Hum. Genet.  39: 173--188.

 Painter, I. (1996)
 Sibship reconstruction without parental information.
 JABES, 2: 212--229

 Boehnke M and Cox NJ (1997)
 Accurate inference of relationships in sib-pair linkage studies.
 Am J Hum Genet.  61: 423--429.

 McPeek MS, Sun L (2000)
 Statistical test for detection of misspecified relationships by use
 of genome-screen data.
 Am J Hum Genet 66:1076-1094

Power, information  etc.
==========================

 Sieberts, S., Wijsman, E.M., and Thompson, E. A. (2002)
 Relationship inference from trios of individuals in the presence of
 typing error.
 American Journal of Human Genetics  70: 170--180.

Leutenegger, A.-L., Prum, B., Genin, E., Verny, C.,
Lemainque, A., Clerget-Darpoux, F., and Thompson, E. A. (2003)
Estimation of the inbreeding coefficient through use of genomic data.
American Journal of Human Genetics, 73: 516--523.

  Almudevar, A. (2001)
  Most powerful Permutation Invariant Tests for
    relatedness hypotheses using genotypic data.
  Biometrics  57: 1080--1088


 Eric C. Anderson and John Carlos Garza  (2006)
 The Power of Single-Nucleotide Polymorphisms for Large-Scale
 Parentage Inference
 Genetics, 172: 2567-2582, doi:10.1534/genetics.105.048074

Admixture etc.
==============

  Anderson, E.C. and Thompson E.A. (2002)
  A model-based method for identifying species hybrids
  using multilocus genetic data.
   Genetics 160: 1217-1229.

  Patterson et al (2004)
  Methods for High-Density Admixture Mapping of Disease Genes
  Am. J. Hum Genet. 74: 979-1000

Prior information and other challenges.
======================================

  Sheehan NA, Egeland T:
  Structured incorporation of prior information in relationship
  identification problems.
  Ann Hum Genet 2007;71:501-518

  N.A. Sheehan, T. Egeland (2008)
  Adjusting for Founder Relatedness in a Linkage Analysis Using Prior
  Information
  Human Heredity, 65: 221-231 (DOI: 10.1159/000112369)

 Weir BS, Anderson AD, Hepler AB:
 Genetic relatedness analysis: Modern data and new challenges.
 Nature Rev Genet 2006;7:771-780


Population structure:
==================== 
 Jones B (2003)
 Maximum Likelihood Inference for Seed and Pollen Dispersal Distributions
 Journal of Agricultural, Biological & Environmental Statistics, 8: 170--183

 Prohdohl, P.A., Loughry, W.J., McDonough, C.M.,
 Nelson, W.S.,  Thompson, E.A., and Avise, J.C. (1998)
 Genetic maternity and paternity in a local population of armadillos
 assessed by microsatellite DNA markers and field data.
 American Naturalist 151, 7--19.

 Beatrix Jones, Gary D. Grossman, Daniel C. I. Walsh, Brady A. Porter,
 John C. Avise and Anthony C. Fiumera (2007)
 Estimating Differential Reproductive Success From Nests of Related Individuals,
 With Application to a Study of the Mottled Sculpin, Cottus bairdi
 Genetics,  176: 2427-2439 ( doi:10.1534/genetics.106.067066)

 Pritchard JK, Stephens M, Donnelly P.  (2000)
 Inference of population structure using multilocus genotype data.
 Genetics, 155:  945--959.

  Jill S. Barnholtz-Sloan, Ranajit Chakraborty, Thomas A. Sellers and
  Ann G. Schwartz (2005)
  Examining Population Stratification via Individual Ancestry Estimates
    versus Self-Reported Race
  Cancer Epidemiology Biomarkers & Prevention  14: 1545-1551.