| Various types of profiles |
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| • | PSSM (Position
Specific Scoring Matrix) |
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| – | Used in the
BLOCKS database |
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| • | Gribskov
alignment profile |
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| – | Scores for
matches, substitutions, |
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| insertions |
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| – | Used for PROSITE
profiles |
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| • | Hidden Markov
model |
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| – | Bayesian
statistical approach |
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| – | Used for the Pfam
database |
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