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University of Washington School of Medicine

Biochemistry 440
Assignments, Problem Sets and Solutions, Previous Exams

Homework assignments |Honors Section Assignments |Midterm 1|Midterm 2 |Final

Reading assignments can be found on the Schedule page .

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Problem Set Solutions Lecture Notes Relevant Links Quiz
HW #1

pH Self-Test

HW #1 short answers

 

HW #1 Key

 

2011 Syllabus

Lect. 1

Lect. 2


*Logarithm Primer

*Units Review (pdf)

* List of Abbreviations

* Amino Acid Codes: Twptophan is W

* Blood, Sweat, and Buffers: pH Regulation During Exercise

* Clinical Correlates of pH Levels Problem Set

* 3D Web Tutorial: Amino Acids

Quiz 0 (pH)

September 30

Quiz 1

October 7

HW #2

HW #2 short answers

HW #2 Key

Lect. 3

Lect. 4

Lect. 5

* ExPASy Proteomics Server

* 3D Web Tutorial: Primary Structure

* 3D Web Tutorial: Secondary Structure

* 3D Web Tutorial: Tertiary & Quaternary Structure

Quiz 2

October 14

HW #3

HW #3 short answers

HW #3 Key

 

Lect. 6

Lect. 7

Lect. 8

 

 

HW #4 HW #4 Key
Lect. 9 & 10

Lect 11

* 3D Web Tutorial: Myoglobin

First Midterm

(Lectures 1-9, HW 1-4)

October 24

HW #5

HW #5 short answers

HW #5 Key

 

Lect. 12

Lect. 13

* Enzymes Tutorials

* Energy, Enzymes, and Catalysis Problem Set

Quiz 3

November 4

HW #6 HW #6 short answers

HW #6 long answers

Lect. 14

Lect. 15

Lect. 16


*Intermediary Metabolism Overview

*Free-Energy Change (Weblink)

*Free-Energy of Hydrolysis of ATP Equation (Weblink)

*Carbohydrate Review

*Know Glycolysis (filled in and corrected)

*Glycolysis blank (corrected)

*Pulse-chase extra problem

*Animated Enzyme Mechanisms

Quiz 4

November 11

HW #7

HW #7 short answers

HW #7 long answers corrected

Lect. 17

Lect. 18 & 19


Second Midterm

(Lectures 10-19, HW 5-7)

HW #8 HW #8 short answers

HW #8 long answers

Lect. 20

Lect. 21

Lect. 22

Lect. 23

TCA diagram (pdf)

Quiz 5

December 2

HW #9

HW #9 short answers

HW #9 long answers

Lect. 24

Lect. 25

Lect. 26

ATP synthase movie F1

ATP synthase movie Fo

Quiz 6

December 9

Final

(2/3 on lectures 20-26, 1/3 comprehensive)

 


Honors Section Reading Assignments

Reading assignments will be uploaded throughout the quarter. Syllabus link.

Date Topic Paper
October 4

“What is Life?” by Schrödinger

Entropy readings discussion Writing assignment (class led by Scott Delbecq)
October 11 How to Read a Scientific Paper How to Read a Scientific Paper; Marquesee, et al. (1989) ?-helix formation paper discussion
October 18 Chaperonin paper discussion Chaperone paper GroELS
October 25 No Class  
November 1 Guest Prof. Richard Gardner Gardner Assign
November 8 Green Fluorescent Protein 1995 Heim Nature
Wavelength mutations and posttranslational autoxidation of green
November 15 Guest Prof. Judith Frydman Frydman Reading Assignment
November 22 Fushinobu et al. 2011 Fushinobu Nature Supplementary material (download both files)
November 29 Homodimers and Heterodimers O'Shea
December 6 Guest Prof. David Hockenbery Cancer Metabolism

Midterm 1 is Monday, Oct 24
Get ready with ...
 


Midterm 2 is Friday, Nov 18
Get ready with ...
 


Final is Tuesday, Dec 13
Get ready with ...
 



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Last updated: September 2011
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