PABIO/ MEBI/ PHG 536 Spring Quarter 2009
http://courses.washington.edu/bioinfo/
Course Organizer:
Timothy Rose, Professor
Dept. Pediatrics,
Center for Childhood Infections and Prematurity Research
Seattle Children’s Research Institute
(206-884-8229, trose@u.washington.edu)
TA:
Lucia
Vojtech (206-399-6461), luciav@u.washington.edu
Mondays and Wednesdays
HSL Learning Commons Classroom A (Computer Lab)
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Week 1 |
March 30 |
The nature of biological sequences |
Introduction/Lecture |
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April 1 |
NCBI resources and databases |
Lecture/Lab |
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April 3 |
HW due |
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Week 2 |
April 6 |
NCBI resources DNA analysis |
HW Discussion Lecture/Lab |
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April 8 |
DNA analysis |
Lab |
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April 10 |
HW due |
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Week 3 |
April 13 |
DNA analysis Protein analysis |
HW Discussion Lecture/Lab |
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April 15 |
Protein analysis |
Lab |
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April 17 |
HW due |
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Week 4 |
Apr 20 |
Protein analysis BLAST searching – Nucleotide BLAST |
HW Discussion Lecture/Lab |
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April 22 |
Nucleotide BLAST |
Lab |
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April 24 |
HW due |
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Week 5 |
Apr 27 |
Nucleotide BLAST Protein BLAST |
HW Discussion Lecture/Lab |
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April 29 |
Protein motifs |
Lecture/Lab |
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May 1 |
HW due |
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Week 6 |
May 4 |
Protein BLAST EST/Gene structure |
HW Discussion Lecture/Lab |
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May 6 |
EST/Gene structure |
Lab |
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May 8 |
HW due |
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Week 7 |
May 11 |
EST/Gene structure SNP analysis |
HW Discussion Lecture/Lab |
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May 13 |
SNP analysis |
Lecture/Lab |
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May 15 |
HW due |
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Week 8 |
May 18 |
SNP analysis Multiple sequence alignment |
HW Discussion Lecture/lab |
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May 20 |
Phylogenetic analysis |
Lecture/lab |
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Week 9 |
May 25 |
Memorial Day Holiday |
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May 27 |
Phylogenetic analysis Take-home finals distributed |
Lab |
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May 29 |
HW due |
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Week 10 |
June 1 |
Sequence alignment/phylogenetic analysis Protein structure modeling |
HW Discussion Lecture/lab |
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June 3 |
Protein structure |
Lab |
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June 5 |
HW due |
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Finals Week |
June 10 |
Take-home finals due |
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