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FISH 559: Numerical Computing for the Natural Resources

Class Notes
 
 

Lecture

Date

Topic



TMB Workshop Schedule
A
23 Sept
TMB Workshop Day 1 (Ex1 Soln)
B
24 Sept
TMB Workshop Day 2 (Ex2 Soln; Ex3 Soln)
C
25 Sept
TMB Workshop Day 3 (Ex4 Soln; Ex5 Soln)
D
26-27 Sept
TMB Workshop Day 4&5)
E
28 Sept
TMB Workshop Day 6 (Ex6 Soln; Ex7 Soln)


Work on selecting a project
1
30 Sept
Linear Mixed models
2
2 Oct
Numerical integration methods
3
5 Oct
Initial project presentations
4
7 Oct
Nonlinear Mixed Effects Models
5
9 Oct
Non-linear minimization
6
12 Oct
AD Model Builder

7

14 Oct

AD Model Builder

8

16 Oct

Numerical differentiation methods

9

19 Oct

Stock Synthesis 1

10

21 Oct

Stock Synthesis 2

11

23 Oct

Stock Synthesis 3

12

26 Oct

Stock Synthesis 4

13

28 Oct
Stock Synthesis 5

14

30 Oct

Stock Synthesis 6

15

2 Nov

STAN

16

4 Nov

Differentiation and Integration in R
Root finding

17

6 Nov

Interpolation Methods

18
9 Nov
Sorting and Searching

19

11 Nov

No Lecture - Veterans Day

20

13 Nov

No Lecture


21
16 Nov
Random number generation (solution)

22

18 Nov

Project discussion

23

20 Nov

GAM

24

23 Nov

Simulation and R (Solution)

25

25 Nov

Non-linear minimization in R; Assignment

26

27 Nov
No Lecture - Thanksgiving
27
30 Nov
JAGS-1 (Guest Lecture)
28
2 Dec
JAGS-2 (Guest Lecture)

29

4 Dec

No Lecture
30
7 Dec
Project presentations
31
9 Dec
Project presentations

32

11 Dec

Project presentations

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