METHODS

1. Consensus Degenerate Hybrid Oligonucleotide Primer (CODEHOP) detection of distantly related sequences

·         Original Manuscript:Rose T.M., Schultz E.R., Henikoff J.G., Pietrokovski S., McCallum C.M., Henikoff S. (1998)  Consensus-degenerate hybrid oligonucleotide primers for amplification of distantly related sequences.  Nucleic Acids Res. 26, 1628-1635.

·         CODEHOP Software: Predicting primers from multiply aligned sequences. (http://blocks.fhcrc.org/blocks/codehop.html)

·         Published Manuscripts using CODEHOPs (Rose Lab)

·         Survey of Genes identified using CODEHOPs (Scientific Literature)

  • Review Manuscript: Rose, T.M (2005)  Consensus-Degenerate Hybrid Oligonucleotide Primer (CODEHOP)-mediated PCR - A powerful technique for the identification and characterization of viral genomes.  Virology Journal 2, 20

2. Real-time QPCR amplification of macaque RV2 rhadinoviruses

            Bruce, A.G., A.M. Bakke, and T.M. Rose. (2005)  Development of a real-time Q-PCR assay for the detection of rhadinovirus-2 lineage-specific viruses in macaques and baboons.  Virology  Journal. 2, 2.

3. Bioinformatics and Gene Sequence Analysis

·         Biological Information Resource (BIR)

Last updated: 2/12/09 TR