
The Biological Information Resource is being developed to
provide general access for students at the University of Washington to centralized biological sequence databases and software programs to
interact with these databases. This resource was the basis of a proposal funded by the University of Washington Student Technology Fee. Database and software servers have been
purchased and installed at the Health Sciences Library and Department of
Pathobiology (School
of Public Health and Community Medicine), University of Washington.
Software and site-licenses have been purchased to provide students access to
comprehensive analytical and database management software. Four bioinformatics workstations have been established in
the Health Sciences Library and in the Department of Pathobiology for software
development and bioinformatics training. Sequence analysis software is
currently being developed for use through a Web browser. Formal
training in Bioinformatics is available through the graduate level course, PABIO 536
"Bioinformatics and Gene Sequence Analysis" (Instructor - T. Rose )
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The
University of Washington BioCommons
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Quick Links: ENTREZ, BLAST, Entrez Gene, OMIM,
RefSeq, SwissProt, UniGene
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DNA Analysis Tools
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Protein Analysis Tools
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- Codon Usage
- Gene Finder Analysis
- Pattern/Sequence analysis
- Primer Analysis/Selection
- Reverse Complement DNA Sequence (Invert)
- Sequence Alignment
- Similarity/Homology Analysis
- Structure Analysis
- Translate DNA/Open Reading Frame Analysis
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- Amino Acid Information and Composition
- Pattern/Sequence Analysis
- Sequence Alignment
- Similarity/Homology Analysis
- Structure (Secondary) Analysis
- Structure (Tertiary) Analysis
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Database Search Tools
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Sequence Analysis Sites
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Databases
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Protein and Protein
Families
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Molecular Biology and
Genetics Links
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Bioinformatics Readings,
Information and Courses
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Software and site development by Jonathan Ryan
(Pathobiology), Cliff Olmsted (Electrical Engineering), James Wallace &
Emily Schultz (Molecular Biotechnology), Jonathan Schaefer (Molecular &
Cellular Biology Graduate Program), Philip Pantoja, and Dennis Kowalik.
For questions and information concerning this
site, please contact Dr. Timothy M. Rose, Dept. Pathobiology,
trose@u.washington.edu. Rose Lab Web Site
Last Modified 4/6/08 by E. Cadag, T.Rose, J.Ryan.
Copyright © 1999 Department of Pathobiology,
University of Washington